The Choquequirao ruins were most likely built during the reign of the Inca king, Pachacuti Inca Yupanqui. They are considered to be the last bastion of resistance and refuge of the Sons of the Sun, who fled from the city of Cusco when it was under siege in 1535. Led by Manco Inca Yupanqui, they took refuge in Choquequirao. Presumably, the place was used as both a check point to access the Vilcabamba Area, and as a cultural and religious centre.
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